This software was built by me (Dave Curran) during my PhD as part of the Wasmuth lab at the University of Calgary.
If you found the software useful, I'd love to hear about it! Feel free to contact me at daves.binf.tools (at) gmail with any comments. If you used MIPhy in your published work, and don't mind me bragging about it here, I'd love to hear that too!
If you encounter a problem with MIPhy, or come up with an idea that could improve its usefulness, please report it at my GitHub issues page, and I'll try to work with you to resolve it.